YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	casy-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVNILEMDL PRPKALLSHH GYDVGQGAIA GGAVAVVVVV CVGFLLVLLV IGVLKMRDTP  60
   61 MPRRRRQKRQ SDGGMHWDDS GMNITVNPLD DVEKNGGAID EFSDEEEEEE TDGESECSYR 120
  121 DEEDDVSEDE EDQTEVLPHL DANQRVVGGL EWDDEDAIST NARSYRV

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.95
Transmembrane Helix	29	54	0.92
Cytoplasmic	55	167	0.97