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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: casy-1
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTAYFIFVG ALLGVSYAKH HHAARAPIIN LQGAEELVAV VREDENIIST VPDFAILSET  60
   61 GPVCNYLLTS QNNEPVPFDI QVVDKYTGAA VLRVKDAATL DCKKPEYNLQ VQAVKCDNDN 120
  121 VKSEGVSLKI RVKDTNNHAP EIENPWYTFH VEEGKVVEEV GVLKASDKDC GHPNGEICEY 180
  181 EITNGLKELP FAINNHGVLR TTQPLNFTQS KSYILTVVAI DCAMRKSKSS LVTVHVDEKC 240
  241 VQGITAMNER VNYAPGVGSK LLLPDVSLEF CEKETICEPK SVQSVIELRA GHVTQGCARD 300
  301 TVYDNQTIQS CGLSTATVKL LNEEALTSSA ENQILADQGI EFDGARGVTV SDENHQGLIP 360
  361 DHFTLSFSMK HAAGTKDEQS NKQNILCESD DFNMNRHHFS VYIRHCKLEV VLRREAGATS 420
  421 DFRAAEWRWS MPEVCDNEWH SYSLLFNGID DVNVIVDGKS FKADERNPEI LDDWPLHKTK 480
  481 ATKTKLVVGA CWHGRQQKLA QFFRGQLSSL YLLSGAVESE RAIKCAHTCP EQLQFTGVDE 540
  541 LLESQSATFS PDQTSLTLKA ETSKQIGQML KRVAYVNTQE KPAPGHRVFL VETEVTCKQD 600
  601 DKKMKLPSSK GYVFVQQAAE PTLSISASSQ LKSNQHMVKV GQAMVPDLTI TISQNNADGE 660
  661 LEDVTQSHKI DYCKMHLQPA RDMDVEYFSS PASLIAALNI EFEHDKDGIL LRGEESAQGY 720
  721 KEVLSKVHYF NTRPESYAKR VYTVQCAMLK GRVLSNQLFV TMTIDGVTTT TSTTTEAPAP 780
  781 AQPDPIQFNF NSGETALDSL ELIERHFEPA FDQLGSSRLQ NILEMDLPRP KALLSHHGYD 840
  841 VGQGAIAGGA VAVVVVVCVG FLLVLLVIGV LKMRDTPMPR RRRQKRQSDG GMHWDDSGMN 900
  901 ITVNPLDDVE KNGGAIDEFS DEEEEEETDG ESECSYRDEE DDVSEDEEDQ TEVLPHLDAN 960
  961 QRVVGGLEWD DEDAISTNAR SYRV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle