YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE27040
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.56
Transmembrane Helix	20	42	0.81
Cytoplasmic	43	162	0.69
Transmembrane Helix	163	185	0.92
Non-Cytoplasmic	186	193	0.71
Transmembrane Helix	194	213	0.91
Cytoplasmic	214	219	0.85
Transmembrane Helix	220	241	0.89
Non-Cytoplasmic	242	245	0.80
Transmembrane Helix	246	264	0.93
Cytoplasmic	265	367	0.99
Transmembrane Helix	368	387	0.94
Non-Cytoplasmic	388	395	0.84
Transmembrane Helix	396	418	0.91
Cytoplasmic	419	424	0.92
Transmembrane Helix	425	445	0.94
Non-Cytoplasmic	446	451	0.90
Transmembrane Helix	452	474	0.81
Cytoplasmic	475	485	0.75
Transmembrane Helix	486	508	0.85
Non-Cytoplasmic	509	515	0.75
Transmembrane Helix	516	537	0.94
Cytoplasmic	538	575	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFDDFLFTY LGEMGKYQKI QFFLVCLPTI VVSMHALSWT FASVDTPYRC RLPSDLPEKE  60
   61 PYYTTLLNFT KCTNDADANV PISEYGKPGV TCHYDRCTLP DNETCHEHIF DHSKVEYTAV 120
  121 QRWEITCDRS WIKATIQAAY YVGQMAGSTT FGMLGDRIGR KKVFFLAIVI QITCAYLIAI 180
  181 APYWWLYALA RAGTGFSHPG IFVIAVVIGM ELVGPKYRKL ASVITGLFFA LGQIFLGIEA 240
  241 IYFTNYQILH VVIASPALLF LSYCQKSAKN RKKIDFANFL ADFLLKNRFF FSRWLVPESA 300
  301 RWLVSQKRYK EADEVLQKAA SVNGTVLPEN WWEQLDDSTT GGGGAPGAPT KKLTGADLFR 360
  361 TPELRKRTLV VFFLWPVISM VYYGMAMKAN VLGGDIYVNF IFAAFVEIPA LFIVYLLIDR 420
  421 IGRRLILAGG LFIAGACLLV NWLMGDNVQL WMAITQMAFT KGSITGVYAA IYTYSPELFP 480
  481 TVIRNTAMGF CSTIARVGAI AASYISMWIA EQFGKVFMII PFGCMAVLAA VMTLLFLPET 540
  541 MGKPLPESIE EIEEGDSYRS SHEMQPLSKS TEETA