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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: let-805
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLRSRGLLL LSLGICYLQL FTLANVALNS NVRVKRQSGT DSLLTVEWEG IQTGDHADSE  60
   61 VKGFLVEYRP ERSGEWQLHP GIIPYKGPNH QYRVQIPKLP TGISYLVRIK VIGENNEVLV 120
  121 ETPEIRAHNE IVSIKCENDD LTAPRYPQVT EVAQYSLAIK WDAPDCGSVG DYQVELTGVS 180
  181 APFDIHRQTV TQPHVSVTNL LPGTFYSVKV RAADRSRNVG PWNSEVLEAK TKGDALPISN 240
  241 NIQLLYRTDS ELRVSWQPFT DPRLQHYEVT AVEVDDDSRR VERRRVDPAL NSFALTGLRP 300
  301 NTKYTIGVIA FVDHEPKQVY QIEAYTTSGG IESWEEKPQV VDQGKQQFAV HWKLPTTSIT 360
  361 VSKFILEYRL PNETTWRTSE QKGVADESGD YSVALSQMNA PYYTVRIVAI DDQNKVVART 420
  421 EELTVGEAAE TSCIGSAGVP TNIRSADVDG QSIKLEWDVP RCDETHTPID GYEYIVYEAS 480
  481 QSAPVDGASY VGAPHVIIKG LKQNVDYTFK VRSRSVNGHS QWSKDVIIET AVAGSVRSGE 540
  541 LGEPNQLLRV KRQAKHLIKD SLNIFKLRIV LSPPCSFLVW TPLTQHSQII SKFKLMYKEV 600
  601 SSSKWIKLIG GMDHFRCPPG IADPEDYCYQ LKGLFFGVHY ISSISYKLTN GEELPSSNPL 660
  661 HFTLVQLDGS AAPSNERVTL TQPRIEQSAS RSVAYWSVVG DRAAVTEYQV DIRSTDERSW 720
  721 RAVEPSVQNE QSQTHYRLPL GQLNVASTYL VRVRALDSSR ATVATSPSAS FSVLCQVPSA 780
  781 PENVRLERVS EQLVRAAWDS SQESGDCQSY FFITGQQNGQ AINQRVPGSD RSVDIAGSSQ 840
  841 GDWRVQVRGV NTAGSGTPSR DAIFASSAQQ SRRSKRSVCD PRTDFWCKGE FSNSPLREPD 900
  901 SGEALCSTPR VLAQENDLIV KWKSEGDGRG VYGYHVQFRN ENSGWKTYGQ LVPYVRDNME 960
  961 YTQTLTGLER GHAYFIHVQV LDRNSYVMYT SAQSSAKSSC SPPTHTPSHL QVAAPDASHV1020
 1021 RVQWALPPQS TWGCSDIQFE IQPEEPRGQP AVVLGSHQTS HIFNSAPNQM WSVKIRAINS1080
 1081 AGHSAWTPAA QTKTPPGGEL IIGPDVSYRQ GKPIISWRSK ENTNDLIESF VLEWKSTTES1140
 1141 SWRQHRNPIP YNGWQRPYSV DLGELPQGHT YQVRIVAKDP NRGNAYTSPV VQVQTQSQCK1200
 1201 APRRAPADVQ VSPLGPTQIR VQWAPLHESE WNCDRLWYIV KHSTPQNQGF KNLTNGENFV1260
 1261 VFDSDPYTQW NFEVQAANPA GESQWSRAQS AQTQGVAPGA VANLRVQPIG PDSLQCSWQP1320
 1321 PVNPNGRITQ YEVTYQLISR GNCDNNQEAP RTITVNGPHF TITGLHPHSK YRVGVAAKSN1380
 1381 VGAGERVSLE IQTDQAAPSG APLYLRTEDI RPTDVSISWQ APPCLQTNGE ITEYEYEVTA1440
 1441 GDRRQTVQKT TENIRGTRAK IENLQPQTRY NVKVRAYTAR GAGPWSTEVP FQTSAGQQNV1500
 1501 QAPGFVKVLH TGADNAQLVW QSPYPNPGYV DKYKCRYAPS GTQQYQERQF PAVSPCQQRQ1560
 1561 IERQNLPQSP PGSRLHCGRI ENLRPEQTYD FQVSAHVKDS GWGPYSPPER TKVTESAVQV1620
 1621 LFVKKIGGSE NSLHINWDVR PDDKNRVTAF RITVVPQDGS QRSQTFNVDR ATYQYRIDNL1680
 1681 RPRTTYNVTV SAATHKEMCG GTAAVMTTDA AALTALSTAP RVIAEEPTSI TIEWESRNRE1740
 1741 AGGFIVEYRL EGGAWQQYAR RIPAHPSQTT YTATVDGLPT NAVVDLRVRV VSQQNEQSNP1800
 1801 SPEVRARTKC SPPTSPPQGV RVDAPSTNEV RVSWARPAKN TWMCDQMNVE ISYRVGNQPE1860
 1861 KVLTVPGDQT EYTFPAEPNQ RWVVKLRATN QVGSSQWSPE QSITTRQGAP GSVRDLRVKA1920
 1921 LSPNEVHVQW LAPLVQRGTI VGYDISYRLK HRLACPEEEP RDVSRDFVTV YNHKDLDYTI1980
 1981 TGLLPYSLYE VRVRARTTEL GPEETKEVST EQQPPSSPPL NLESTYALER SLSFQWEPVD2040
 2041 CSQRHGHVVN YEYEILGQDD WAKLERQIAN TSDLRVTIDG LTPYTKYVMR VKAYNSIGGG2100
 2101 PNTENLVVMT AKAQAPLPPQ DLVVAQEGTS FFMVSWLPPY PPYGPHDAYK IRYQQIPSDD2160
 2161 WKEVEKGIKD PLLQCPGESP RFCYNATGLD SGQQFKIQVA TRIEGGSYGP WSSLVIANTL2220
 2221 QVLPDAPRAI HLIEKTDHSL HIRWVPPIDP KGYVTQYRVS IVSLDDVNDK KRTHIVNHPT2280
 2281 LTYLFEELNP ETSYNISISA GTKQGFGREI WTRYTTDPFN IPVVGTMPTV TPDGANALDV2340
 2341 QWNAVLDPKN RVKGYIIEIR NSDTPVWQEI GGVTNHDAGK STYFKKLTGL DSDTLYFIRI2400
 2401 KVVDQRQRVG VPSPEAQART GCAAPLSPPT NLNLASPSNV QVRVSWQAPN QNSWKCSAIR2460
 2461 YKLEYINGTE GRKQIDLPSS SIEHLFDSKS NTKWTVRIRT ENDAGSSEWS KELSITTSEG2520
 2521 APGPVEGLTA KPTGPTSIVA RWKPPRDPNG VITGYTLTYQ LKSIGECGPR SSTPIEKHVK2580
 2581 NEEETLEGLL PDSTYEIHVV AHTSHAGPQS SVVTVTTEEA APTGPPQNVR AGSVTSSRAD2640
 2641 ITWTQPECEQ RNGKITDYEY ELWSMDTWAD NSTGHNPTER LNLDQLIPYT QYQIRVRAIN2700
 2701 KEGDGPFSEW VPFTTSATNP PAPSDLQEEA TFPHAIEISW LPPTPPHGNI DFYKVRYTPS2760
 2761 GEANYREIRV ETDRLECSDS NKKDRLCYRL SDLDPEQEYD IQVSAHTEGG GWSEWSDELT2820
 2821 SRTQQQNIPV LERELEVTDK TSNSISLKWE GLPQDQATHV VGYVLEFKSE DDNAEWQEYN2880
 2881 GVVKHRKTSS DYKITVKQLE TATLYFFRLR VVGKNDKRGQ PGPETKETTS CGKPEAPPES2940
 2941 LKLESLDFET LKITWTPPEE STWRCDNVEY LIDFVNTTSR GNWTVSTDAP SELIVPTQPG3000
 3001 TKWDVKIRTQ TVEDSGKPQA SRWSDRVSIT TQSLPGEIFV TVEPKGPREA LVTWELPDKD3060
 3061 QKWNYGVDIT YKLKQLGGCN EVQTGAKEPV TLLNVQEKQI PLENLQPGSL YEVSVTPRRP3120
 3121 PSLHSSIVTP KTVRTFRTKN DVPTGPPQNL QSTVRKDSEL GFKWDAPECI QQNGNITQYE3180
 3181 FELVGLDEWN EGTREGVTPR QNTLIDQLQP GSLYRIKVRA YTAEGPGPWS DSLEIRTTGS3240
 3241 ELGPPRELTA VQTKATQIQL TWLPPYPEKA IVTAYRIRYS PRADDSNPTE VELSGDDLTC3300
 3301 SGYKSPIITS ANLCATIKGL QPSTTYRFAV QGQSSSGNWG EWSSDYFSTT RNDDNELLGG3360
 3361 SLKLLSAGHD NLKVKWTPPA VIGEKIDKYD IFISVASVLD QNPKKFDVNG QTTDYHFRHL3420
 3421 DSVTQYNVTV QGTSEGNKLW FISSVFSTTD FAEGLLNWLP APTDLHLIEK SDTMLHVDWV3480
 3481 PPEIFDPEQR ELITHHRVTI APFDPTTGKT GPSKNYTVPY PGNSIKFEGL RPETIYNITV3540
 3541 QAGTNSGYGH ILWGTYSTLA PGQRHILRLL NRTPTTLNVA WEPVWGRSHS GYTLTARTLY3600
 3601 SVYGNVRLQQ IKTFDVDASE TEFVIRGLHP STVYNVTLTP KDHNEVAWGA YATLPPGWFV3660
 3661 VKNLKQCDKT DFAVSMSWEP VELDMASDYQ VRYLRLKEHD GIWTEEEARP AKELLCPKDG3720
 3721 CGRLCYLVFN LPHNPTEYVF QVRAKVDGEW NHWKSAPKKM TSSEPLSIRR SCCIVPPPYF3780
 3781 VDNIGAPGTF WEVDVNPAAT ENNVTRYYVV VDERDPPGDT NWTELTDKVT ANKMKIPYYV3840
 3841 AASFNLETLP EPRKVRIGDG SVIGGYLNYP LVKGKKYNYE VYTIWNVTGA PLVGRLRASP3900
 3901 YITSSWPWWW LLLPLLAALL LTLLCCCIPW CLKRRYRSSK EHSRLVTNGQ HAPLLEEQKA3960
 3961 GMNENMRQLE TRLDKMRGAV DGRARGDFED GYMKGYKDAN KLGSAHAARR RLDDDYGTRD4020
 4021 DRFHEGYVKG LKDAGMTGMT TSMHNLAQRT GGGYSAGFAQ GYKDGNSGIF GDRVTPSLIS4080
 4081 RLDEQYAGQE DFKQGYVDGF KEGASSRVGE RSRFEDSRKL QQSLTELTER LTSLEKTKGD4140
 4141 EIHSTKIYHV YNQQPEGATM SSTGAQLAQE LEEIGSTSRR STLRRHYTPG DYLKQDAEEG4200
 4201 YNSLSRNRRS LSASALAANR EAAHQSSSYL QTGGTLSRSR HHMSHAGSSY LSRAAQDAQV4260
 4261 GGTDTYAKRY NYRSRSDVGS PRRYASQTLL DGSRPGPSTP HAKRDALHTL TKELDSLSRS4320
 4321 PDVRGSTPRG TTGYGSDNNA YDTVRSRARG YSNYDYDTFQ SSRNVTNSSS AAAAASGAQT4380
 4381 TGATAASSSS ATQQDKSGKW AEQLIDLVSE PLDTTIARIN NYTSSSNDRG QGDVVEEKYH4440
 4441 RSYKEEHSSR 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle