YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE26907
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDQPPAENA DVRQRRAPES PVTERLRAPA RDDARPTSDE SDMEGILQDE DSDAGSKNKE  60
   61 EKLERLTQAI PQDKGSLGVF ADSMLEALPP RWRNWVVRGL FSIIMISTFT FIVTRGATWL 120
  121 MFLVFLIQFK CFQEIISIGL AVYRLYDFPW FRALSWYFLL TSNYFFFGES LIDYWGIVLK 180
  181 KDNFLHFLVA YHRLVSFALY CIGFVSFVLS LRKGYYMRQF SLFAWTHLTL LLIVSQSFFI 240
  241 IQNIFQGLIW FLAPVAMIIC CDIMSYMFGF FWGKTPLIKL SPKKTWEGFI GGAFSTVVFG 300
  301 ILLSLALYNR PFFVCPVQHY QTDSSNCTIP LAFQLQDYPV PRPFSFVYKI LRKEPIIQLC 360
  361 PFVFHSIALS LFASILGPFG GFFASGFKRA FKIKDFGDVI PGHGGLMDRF DCQLLMGTFV 420
  421 MVYIHSFIRV PDASKLLKQI MTLEPQDQLN IFNLLQSELS KTGLI

Type	Start	End	Confidence
Cytoplasmic	1	93	0.99
Transmembrane Helix	94	114	0.91
Non-Cytoplasmic	115	121	0.63
Transmembrane Helix	122	143	0.85
Cytoplasmic	144	152	0.71
Transmembrane Helix	153	172	0.87
Non-Cytoplasmic	173	188	0.81
Transmembrane Helix	189	211	0.90
Cytoplasmic	212	221	0.83
Transmembrane Helix	222	241	0.95
Non-Cytoplasmic	242	248	0.77
Transmembrane Helix	249	272	0.91
Cytoplasmic	273	287	0.87
Transmembrane Helix	288	308	0.93
Non-Cytoplasmic	309	363	0.94
Transmembrane Helix	364	386	0.89
Cytoplasmic	387	465	0.79