YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	tsp-15
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGALGDSAYG ARGRLIKFSY IVTALISILF SISCICYGIW LLARRSQYAE LVSPSLYVDV  60
   61 GRILVIISIL SILNYLICFY AIFKEMRCFV TSCAVASIVI AVMLIIGGCI GLNFRDQLTH 120
  121 YTPLNLKMLT SLRELYGTHD MKGITESWDA LQSNFKCCGV NGTDNAQIWK TSKWYMHQRA 180
  181 PKLLIPESCC IPSEIERCRS NPFDQDAPPP YYTSTCYEPL QNDLLHVMNV ASWLCITNAI 240
  241 VQIIPSVAGC WYSKLIRK

Type	Start	End	Confidence
Cytoplasmic	1	19	0.94
Transmembrane Helix	20	41	0.97
Non-Cytoplasmic	42	59	0.90
Transmembrane Helix	60	83	0.88
Cytoplasmic	84	88	0.90
Transmembrane Helix	89	112	0.90
Non-Cytoplasmic	113	229	0.97
Transmembrane Helix	230	252	0.72
Cytoplasmic	253	258	0.67