YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE26450
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.69
Transmembrane Helix	17	36	0.75
Non-Cytoplasmic	37	116	0.71
Transmembrane Helix	117	135	0.72
Cytoplasmic	136	143	0.79
Transmembrane Helix	144	163	0.92
Non-Cytoplasmic	164	168	0.75
Transmembrane Helix	169	191	0.92
Cytoplasmic	192	199	0.86
Transmembrane Helix	200	221	0.92
Non-Cytoplasmic	222	226	0.81
Transmembrane Helix	227	248	0.87
Cytoplasmic	249	316	0.93
Transmembrane Helix	317	339	0.84
Non-Cytoplasmic	340	352	0.74
Transmembrane Helix	353	374	0.83
Cytoplasmic	375	382	0.88
Transmembrane Helix	383	403	0.94
Non-Cytoplasmic	404	412	0.82
Transmembrane Helix	413	435	0.90
Cytoplasmic	436	446	0.79
Transmembrane Helix	447	467	0.53
Non-Cytoplasmic	468	473	0.45
Transmembrane Helix	474	496	0.90
Cytoplasmic	497	533	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIQKVDDIF ELDAYQLVVL AFNEFLIFTM LSNVVFNMFG AAAPRLPGCD DIIYNATSPF  60
   61 QQCEQYDAHL DCEEPAMEYE FKSVAVEFQE LCSRHNEHSY MDSITQLFGV NNRVRFSTTS 120
  121 QMIGIMLGSA IAGQLSDLYG RKKITLLFLC MMLFFSTSSS FSSSIEVFII VRFFIGICCG 180
  181 GLTTVGSILV VENLPSAHRL WMSTVVTWAP NYMLFALFAY ITGEWRCLAR MCNAMTVIAI 240
  241 LICAFLLPES PKYLIQARKG KLAVKSIKYI NKFKRVRNQL TDTEIEDVVH SAIEVDTKSR 300
  301 AKAKKYSFIH LYIHPKITVQ TVVASISMFS VSYVTYGLLF NYDVLTGSIY MNAAVSGFLR 360
  361 YVVGAVVAVL DHFGGEHVGR KRMHFITVSF IMCCMFGIFF IYFNDLVLEY KSWIRALTLL 420
  421 AFGTTGCLFL QLLLITAEMF PTGIRNIASA HINVCGRLGN VFGPMVFSYK LGFAGSGYLI 480
  481 LGVICLLDVI VFHIFIPETK NQPLPQGMPS RKKQRKDPEV QKSLTTISEE PDK