YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	odr-10
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGELWITLV DTADIVGVTL TFCVNIVLLG LLKTRGKNLG TYKYLMAFFS VFSIFYAIIE  60
   61 FILRPIMHIE NTTFFLISRK RFNYSTKLGK INSAFYCACF ATSFVVSGVH FVYRYFATCK 120
  121 PNLLRLFNLP TLLLWPLGCS VPVTMWASVS YFLYPDTEYT EAAVTNVLNN HYNWIKKENV 180
  181 SYIAYVYYQY ENGVRHIYLK NLLGCFVHYF VMSMTFVVMF YCGYATWKTM NEHKDVSDRT 240
  241 RALQKQLFKA LVLQTLIPTI FMYAPTGVMF IAPFFDVNLN ANANFIVFCS FLYPGLDPLI 300
  301 LILIIRDFRR TIFNFLCGKK NSVDESRSTT RANLSQVPT

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.86
Transmembrane Helix	12	32	0.90
Cytoplasmic	33	43	0.78
Transmembrane Helix	44	63	0.92
Non-Cytoplasmic	64	91	0.93
Transmembrane Helix	92	113	0.93
Cytoplasmic	114	125	0.83
Transmembrane Helix	126	149	0.83
Non-Cytoplasmic	150	205	0.95
Transmembrane Helix	206	227	0.92
Cytoplasmic	228	246	0.95
Transmembrane Helix	247	272	0.83
Non-Cytoplasmic	273	282	0.84
Transmembrane Helix	283	305	0.91
Cytoplasmic	306	339	0.98