YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE26225
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYPGTGVKQ PEVSIDLNGF YSSNFEQFEH PDQSSNAPNS GSISSPTGQI SAQAYRRTNA  60
   61 GAAGKFMENS GFGWLLEVNE EDSDQIPLLE ELDIDLTDIY YKIRCVLLPL PYFRMKLNIV 120
  121 RESPDFWGPL AVVLAFAILS LYGQFGVVSW IITIWFCGGF MVYFIARALG GDVGYSQVLG 180
  181 IVGYCLIPLV VTSLITPLFS SFRLLSNGLG MFGTIWSVYS AGTLLCVDEL QAKKPLVVYP 240
  241 VFLLYIYFYS LYSGV

Type	Start	End	Confidence
Cytoplasmic	1	123	0.98
Transmembrane Helix	124	143	0.91
Non-Cytoplasmic	144	150	0.62
Transmembrane Helix	151	170	0.90
Cytoplasmic	171	177	0.79
Transmembrane Helix	178	199	0.91
Non-Cytoplasmic	200	207	0.70
Transmembrane Helix	208	227	0.91
Cytoplasmic	228	235	0.84
Transmembrane Helix	236	253	0.84
Non-Cytoplasmic	254	255	0.81