YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srw-38
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSSKATDYV VPEEFRGDAW LTFSSWINSI SAYLYLTDFI ISFIGIFPSL FHFWVLTRES  60
   61 MRHLTTNLFL IGMTLCGIIH MICNIIEFCP LLYNYYFSFE ISFECFPFAS YSKIVSNYYS 120
  121 SMTNAVVTGM LTYFTVAMAI IRFLVVKFPF ARSMQRLIYS KSGLKILLPI IILILPLWIA 180
  181 EISSTNIVET GIWVPGPNCD IFAENYTEKM YTVETSITFG IDDFYWIVYY IYAVIFQFIP 240
  241 SILLPISTVL LIIELKKNKK TKTWTSKSQD RSTKLVVYMT ISFIMANAPY SLIYSLSFML 300
  301 SAYARMIISQ LSVIAYLLTT LNVATHWLLC YFMSTQYRNT AREILGKNNI DSTVMVISYQ 360
  361 TSRAKMF

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.91
Transmembrane Helix	32	56	0.88
Cytoplasmic	57	65	0.85
Transmembrane Helix	66	88	0.89
Non-Cytoplasmic	89	124	0.90
Transmembrane Helix	125	146	0.92
Cytoplasmic	147	162	0.91
Transmembrane Helix	163	184	0.86
Non-Cytoplasmic	185	228	0.96
Transmembrane Helix	229	253	0.90
Cytoplasmic	254	274	0.92
Transmembrane Helix	275	294	0.95
Non-Cytoplasmic	295	311	0.71
Transmembrane Helix	312	332	0.88
Cytoplasmic	333	367	0.96