YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ubc-15
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNLGPGVSV PAAGTASSSA VRRLQKDYAK LMQDPVDGIK ALPNEDNILE WHYCLRGSPD  60
   61 TPFYGGYYWG KVIFKENFPW SPPAITMITP NGRFQTNTRL CLSISDYHPE SWNPGWTVSA 120
  121 ILIGLHSFMN ENSPAAGSIA GTPQDQRMYA AASKEFNVKV YNWNLAGNPH CNFFLTRDEE 180
  181 KWFLGHGRGA DKFHRPFILL CFPPVFFCFS SIFPVFSY

Type	Start	End	Confidence
Cytoplasmic	1	195	0.66
Transmembrane Helix	196	216	0.74
Non-Cytoplasmic	217	218	0.81