YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE26021
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLLVLHSL LVLPLEHLPK ISLALPISLA LPISLAPFFA ARLAAIFRIV FFLIFSSFFS  60
   61 FFERFQVIMP SNPTLSNTPK GSKKNHSMKF KLEAIQYAKK YTKAKAARDL NVSRQNIQQW 120
  121 VAQEEQISAQ LRNPDVKATK RLQGGGRALK FKDLDDEMIS WFHDQRKQKF RVSRFLIRQK 180
  181 AKEVTNFLKA RLGIECCRRA TTTCQKEPDE YSKKIVDYIL YVEKMRSENN YANSHIFASD 240
  241 ETAVYLDFSN SLTLNEKGAK EVPVKTTGHE KMHVTVLLTA RADGYKCRPY VLLPRTRPDQ 300
  301 EIVKRFQNSL QLNWCNRTFF NDEATAYYLK TIIGPAFFGK RFLAWDAFRC HISDATKAVL 360
  361 KSLKIGTAVI PGGCTKFIQA PDVFWNSSFK SSIRRKYEDW MVHGAKSFTK NNNMRPPSMF 420
  421 EYLEWIESAW NELPKDLILQ SFKGCGLTTA IGGSEDYEIH CFKPSGSIPS GLDLLNRTRI 480
  481 DNTLSDLAQQ IEIDGSQEDG YNSDSSIISV G

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.61
Transmembrane Helix	18	39	0.67
Cytoplasmic	40	43	0.56
Transmembrane Helix	44	62	0.79
Non-Cytoplasmic	63	511	0.93