YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	dpy-10
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYRCVTGLQ IGFSLFSFII VCVALPIMYN HVQNTITYVD REMAYCERSN DEAALELQYG  60
   61 KMRMTGNRTA RGAYGSGASH GFRPTAYGDE ITGAPLETEC PGCCIPGPPG PRGSSGTPGK 120
  121 PGLPGNAGKP GMPGTTPNQT CPLNQVREPP PCRPCPKGPP GIKGWPGFPG DVGPPGPPGL 180
  181 KGIDGEDGAP GETGPTGPPG YRGGPGAPGD KGPTPEGDLK EGPPGDEGPP GPIGAPGMPG 240
  241 LPGRNGLTGG QGERGWPGVS GESGEPGYPG PEGPMGGQGP PGEPGVCVCQ NVDSILLINP 300
  301 GPQPRIRADD YNSDDGYGGS RGGGDRAGYQ GYGRK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.78
Transmembrane Helix	9	29	0.87
Non-Cytoplasmic	30	335	0.96