YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sri-32
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIAFSPSFW LIAYYYSIGF ISLIFNVITI LLIVFKSYKL DSFKYYLLAY QVSCANYVLQ  60
   61 LTILFQPMPL FPLLGGYCQG FLATYLGIWA HYMITINIAS AVIEVELLTI CFIMKQQSLS 120
  121 LIINKHVIPE SLLYTGAGAF IYIPLSVFLT FRQITMSQED QMAYIATNHP EYHRNFEELQ 180
  181 NFAIFHFNSW CYYLVVVTIS GGLFCGGAAI FTTADMFRMM KDLQTRVSRS SLKRYRATIQ 240
  241 SLIAQLVVSM MLVVPLTTFV ALIFNKSEYA QAIAQFCLAI CALHSIVNAG VLILSTSQYR 300
  301 NFLARKLPQP KFFKSSSIHV S

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.95
Transmembrane Helix	12	35	0.92
Cytoplasmic	36	45	0.85
Transmembrane Helix	46	66	0.83
Non-Cytoplasmic	67	88	0.78
Transmembrane Helix	89	112	0.87
Cytoplasmic	113	131	0.87
Transmembrane Helix	132	152	0.91
Non-Cytoplasmic	153	190	0.95
Transmembrane Helix	191	214	0.91
Cytoplasmic	215	240	0.89
Transmembrane Helix	241	263	0.91
Non-Cytoplasmic	264	271	0.87
Transmembrane Helix	272	296	0.90
Cytoplasmic	297	321	0.97