YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE25913
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQITQQYRR LAFIISCILG LLVYWKMFKN NYIEENINMT HDFIVPFINY VPGFFVSPEN  60
   61 KLVACEIRKS MSQLTTNLMC LLYNETQFVA DKNTLNDTWE APRHCMQEHS FTNFSDDLKN 120
  121 DTDTVKFAFI RDPIRRFLSF YLNNKSECYD CGSDMRCVVE RIYNGLWNIQ NDRNMTFILM 180
  181 EAHAAPLSWN CGFNEGVSKW ELLMMGSDLD ERTSSTTKLA KILRKQGVRH ELVESIEKDI 240
  241 LKGETAHSTF KSTNRLAAEK QIREDPVVRY FLHKIYFFDY VVFPFKRDVL DPEYRSIFAT 300
  301 APAKVDIKFF V

Type	Start	End	Confidence
Cytoplasmic	1	9	0.76
Transmembrane Helix	10	28	0.86
Non-Cytoplasmic	29	311	0.87