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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: cft-1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYYSVSVNLS KNARQIQNET ENEQAKSSFA SKLLELPVSK LLQKCRSSTI TVDDLPILEE  60
   61 KQCSNRVMSG FKWKKRVIFS ILMKFWKSFA GAFAFRMCAI FADYASILLL KYLIDSAEIS 120
  121 ATLFNFFIIA VLILFFMQLK SLLLGVHTYL VGEDSVEMVT VLNNIIVKKA LHLTSENTDW 180
  181 NRSKISKLLT THSEAVSNGL AYVHHSCSAL IELTIALFWI WETLGTRTII VVLIVALVYA 240
  241 VFNIIDSYVY KKSLKVQLKC RDERVEFEKT VLNSMETIKM FSWEPHFWKK LKSMRGKELS 300
  301 VFRKTLSINS FMHSLNVTSP FVITFVSFAV YGLQYEISAL RFEDAFVLIA IFNYMRRPLH 360
  361 VIIPSLEIVD KALHSATIIN QFLIVKQSPK INTKTAPQPP VEPDLDIKIL NANFSWNGKD 420
  421 DTLNDVCVHV KKGEKHAFIG FPLCGKSSLL FSITGELKMT KGNMWVSKGI SFAPASPYIF 480
  481 SQSLKENILF GNDYVKSKYD KVIMACDLKK DIFSLPRCEA TVLGDKGYVL TSTQKAQISL 540
  541 ARCLYEDADI YALDKAFGPM DRTTSNKIFT RVLGENGYLR DKTVILATNN IELIKTFTMV 600
  601 HVLKNGKIET SGSYDQILEC SEIMSDLLNQ SRIDKIIEEK YSDEKPPRKT VMFDDKVLKK 660
  661 RKKKQSMEDT APVFENRSVY PFYFRSGSFI FTAFYIVLLI CRFVFQALAF FWLSFWLDPV 720
  721 WKKVECENCP QYVFIQTMSF FAISAIISTM LSYTFFVLTN VQTSRKLYQH ITSAIFAVPM 780
  781 IFLSPTNKES LMNMITSDLD IVDTQFPLFF KFSFECTLHI LMIFAIVCVN VPVFAIFVVA 840
  841 FLIFLVGLLR YFLPALHKIS SLEEQKRDLF LCGSIEDFEA RIMVRTFGKT RQTLAKTSVN 900
  901 ADILTRCRMA RYSTLRWISL RTEFISNLMI CMCFFIASIC LKVDYIGNAQ FALSVASILC 960
  961 ISELVSTFIR TTCILESLTP HVQRISNVRE YPKEPMIDKC TIRDSWPDDG KIEIKNLNVF1020
 1021 ANKYRHVIKD VSLVIEEREK LGIIGKVGSG KSQLAKTLVM MSSADKESHI VVDDLDIFEM1080
 1081 SVKTLRSRIT VIPQKAKIFS DTLRSNIDPC CQFADSDIWL AIEACQLREY VKSLPDGLHQ1140
 1141 MVSPEKMSNE QKCQVNVCRA LLKGGQIFVI DQSTKMMKEP IKSLVNEAIR NSLKQSTTIW1200
 1201 IGEDFSDVEH CDRVVVIENG VILTTDTPQN LISEFGSLQK CLLNFSK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle