YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE25576
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRKSLKMSK KKCFQVPYGK IASQLVTLIL PLLIGIAIKK FKPTWAAKAR KIMRPFVIFV  60
   61 MIFVVIFGSL TNLYMFRMLT GPALIGGLAL PWCGFMFGCF AALLTKRKPE DVTAIAVETG 120
  121 IQNTGIAILL LKASFGQPDA DIGSLIPVIV AAFTPGPLLL GAAVHLTFKW MRNRRNMKCP 180
  181 DTDSIEKQGV ELIDASKLTE QQKLGLPNSQ YESLLDGATV AAAQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.69
Transmembrane Helix	21	38	0.79
Cytoplasmic	39	54	0.77
Transmembrane Helix	55	76	0.90
Non-Cytoplasmic	77	82	0.76
Transmembrane Helix	83	104	0.94
Cytoplasmic	105	113	0.77
Transmembrane Helix	114	135	0.82
Non-Cytoplasmic	136	144	0.86
Transmembrane Helix	145	168	0.92
Cytoplasmic	169	224	0.99