YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145362203
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNTNTLFLR HDDDSEILIF QENSVFPLFV FASWGIWRAM ATFAELVLST SRCTCPCRSF  60
   61 TRKPLIRPPL SGLRLPGDTK PLFRSGLGRI SVSRRFLTAV ARAESDQLGD DDHSKGIDRI 120
  121 HNLQNVEDKQ KKASQLKKRV IFGIGIGLPV GCVVLAGGWV FTVALASSVF IGSREYFELV 180
  181 RSRGIAKGMT PPPRYVSRVC SVICALMPIL TLYFGNIDIL VTSAAFVVAI ALLVQRGSPR 240
  241 FAQLSSTMFG LFYCGYLPSF WVKLRCGLAA PALNTGIGRT WPILLGGQAH WTVGLVATLI 300
  301 SFSGVIATDT FAFLGGKVTP RMIPHR

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.55
Transmembrane Helix	23	37	0.45
Cytoplasmic	38	139	0.90
Transmembrane Helix	140	163	0.91
Non-Cytoplasmic	164	211	0.86
Transmembrane Helix	212	234	0.86
Cytoplasmic	235	243	0.74
Transmembrane Helix	244	262	0.79
Non-Cytoplasmic	263	290	0.76
Transmembrane Helix	291	313	0.91
Cytoplasmic	314	326	0.85