YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUP5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.98
Transmembrane Helix	34	56	0.88
Non-Cytoplasmic	57	69	0.88
Transmembrane Helix	70	93	0.92
Cytoplasmic	94	104	0.85
Transmembrane Helix	105	126	0.88
Non-Cytoplasmic	127	131	0.70
Transmembrane Helix	132	153	0.90
Cytoplasmic	154	159	0.84
Transmembrane Helix	160	178	0.94
Non-Cytoplasmic	179	196	0.86
Transmembrane Helix	197	219	0.86
Cytoplasmic	220	233	0.74
Transmembrane Helix	234	252	0.90
Non-Cytoplasmic	253	284	0.86
Transmembrane Helix	285	308	0.86
Cytoplasmic	309	325	0.83
Transmembrane Helix	326	346	0.89
Non-Cytoplasmic	347	361	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDETTERPTV SFSYSNWISN IKKSTREAYE AKPFSHWILL FFSGAAMLIA FPASSLLSRL  60
   61 YFSNGGKSKW IISWVAVAGW PITCLILLPT YIFQKIKPTP LNTKLVLSYV VLGFLSAADN 120
  121 LMYAYAYAYL PASTSSLLAS SSLAFSALFG YLIVKNPLNA SVINSIVVIT GAMAIIALDS 180
  181 SSDRYSYISN SQYFAGFFWD IMGSALHGLI FALSELLFVK LLGRRSFHVA LEQQVMVSLT 240
  241 AFAFTTIGMV VSNDFQGMSH EAKSFKGGES LYTQVLVWSA VTFQLGVLGA TAVLFLASTV 300
  301 MAGVLNAVRV PITSVAAVIL MHDPMSGFKI LSLVLTFWGF SSYIYGSSSS NSSTQASSSS 360
  361 S