YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATCA5_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIPSIGYVF FLIFISITIV SSSPDHGEVE DETQFNYEKK GEKGPENWGR LKPEWAMCGK  60
   61 GNMQSPIDLT DKRVLIDHNL GYLRSQYLPS NATIKNRGHD IMMKFEGGNA GLGITINGTE 120
  121 YKLQQIHWHS PSEHTLNGKR FVLEEHMVHQ SKDGRNAVVA FFYKLGKPDY FLLTLERYLK 180
  181 RITDTHESQE FVEMVHPRTF GFESKHYYRF IGSLTTPPCS ENVIWTISKE MRTVTLKQLI 240
  241 MLRVTVHDQS NSNARPLQRK NERPVALYIP TWHSKLY

Type	Start	End	Confidence
Signal Peptide	1	22	0.90
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	277	0.99