YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SLAH4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.84
Transmembrane Helix	43	63	0.70
Non-Cytoplasmic	64	74	0.85
Transmembrane Helix	75	98	0.87
Cytoplasmic	99	110	0.82
Transmembrane Helix	111	130	0.92
Non-Cytoplasmic	131	137	0.77
Transmembrane Helix	138	159	0.86
Cytoplasmic	160	168	0.86
Transmembrane Helix	169	192	0.82
Non-Cytoplasmic	193	199	0.77
Transmembrane Helix	200	220	0.92
Cytoplasmic	221	231	0.85
Transmembrane Helix	232	254	0.85
Non-Cytoplasmic	255	260	0.84
Transmembrane Helix	261	283	0.88
Cytoplasmic	284	291	0.90
Transmembrane Helix	292	312	0.92
Non-Cytoplasmic	313	319	0.88
Transmembrane Helix	320	343	0.91
Cytoplasmic	344	365	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIPSQEIHI MIDNTISRRK ERKTNLADAE PIVLMSVLSS LHAGYFRISL SLCSQALLWK  60
   61 IMVHLHSELP SMAYYLLWYL ALATQVSLCF LYAFKCIFLF DMVKEEFSHY IGVNYLYAPS 120
  121 ISCLLLLQSA PMIEPHSVLY QTLFWIFAVP VLTLDTKLYG QWFTTEKRFL SIMANPASQV 180
  181 SVIANLVAAR GAAEMGWKEC ALCLFSLGMV HYLVIFVTLY QRLPGGNNFP TTLRPVFFLF 240
  241 FAAPATASLA WNSICGNFDT IAKMLFFLSL FIFISLVCRP NLLKKSIKRF NVAWWAYSFP 300
  301 ITFLALNSVQ YAQEVKDHVA SVLMFIFSSM SVLIFISVML LTAANSKRLL RRDHVLWSST 360
  361 GPKDK