YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145327743
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHGICRMSR EIRSKNIRLL IFPALSSLIW MEYQIEKLVC HICCPLRKLL LLVVLLLELI  60
   61 TKMKWLSMME RGSLVQPVYG GEMFRVFGHE KVWVLDGGLP RWRASGYDVE SSASGDAILK 120
  121 ASAASEAIEK IYQGQTVSPI TFQTKFQPHL VWTLDQVKNN MEDPTYQHID ARSKARFDGT 180
  181 APEPRKGIRS GHIPGSKCIP FPQMFDSCNT LLPAEELKKR FDQEDISLDK PIMASCGTGV 240
  241 TACILAMGLH RLGKTDVPIY DGSWTEWATQ PDLPIESVES SS

Type	Start	End	Confidence
Cytoplasmic	1	15	0.78
Transmembrane Helix	16	33	0.73
Non-Cytoplasmic	34	43	0.71
Transmembrane Helix	44	61	0.62
Cytoplasmic	62	282	0.61