YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG12_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	69	0.60
Transmembrane Helix	70	92	0.88
Non-Cytoplasmic	93	98	0.59
Transmembrane Helix	99	117	0.85
Cytoplasmic	118	128	0.70
Transmembrane Helix	129	148	0.71
Non-Cytoplasmic	149	171	0.68
Transmembrane Helix	172	195	0.81
Cytoplasmic	196	211	0.78
Transmembrane Helix	212	235	0.86
Non-Cytoplasmic	236	262	0.91
Transmembrane Helix	263	283	0.82
Cytoplasmic	284	291	0.67
Transmembrane Helix	292	309	0.87
Non-Cytoplasmic	310	315	0.70
Transmembrane Helix	316	336	0.88
Cytoplasmic	337	345	0.79
Transmembrane Helix	346	371	0.85
Non-Cytoplasmic	372	497	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTDSKMAKF LQSYGYDLIL GSVAAIYVVM APYTKVEESF NVQSMHDILY HRHHLDSYDH  60
   61 LEFPGVVPRT FIGAFIVSVF ASPVVSIISC LGFPKVYSLV AARLVLGCII LSTLRFFRIQ 120
  121 IKKKFGNQVE TFFVLFTSLQ FHFLFYCTRP LPNILALGLV NLAYGNWLKG NFYPALSFLI 180
  181 FATVIFRCDT MLLLGPIGLE LLLTKSISFW KALKYCVGTA LLAVGLTIFV DSIMWKKFVW 240
  241 PEFEVFWFNS ILNRSSDWGT HSIHWYFTSA LPRSLLVAYP LSLLGTLVDR RVPFFIVPVL 300
  301 SFVILYSKLP HKELRFIISS VPMFNLSAAV AASRIYNNRK KTIWKLVNMV MLAFFAISAG 360
  361 CTVVTFMASY YNYPSGYALK RLHQIGHPAN VAGEEWVHID TFGAMNGISR FCEDDFPWRY 420
  421 SKEEEIVVEE LRNRNFTYLV NEHSSVDGYK CLFYEEGFER LELRRGFPPI VLVKKAKVYL 480
  481 HREMKKEDPF HKKWPGC