YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sqv-2
Protein type:	Globular with Signal Peptide
Type Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFYRTYLLV AGAFCSLCTL AVIFNCGWDD SPPATPSAIN GGGSNAPLIS SPTNLPETFL  60
   61 YISILTSPNE TERRQNVRDT WFRLSTKGPS VFIAKFAVGT MGLAAEDRRL LAEENEKFGD 120
  121 LALLDRHEES YERLAKKTLA CFVHAFANFK FKFFLKTDID SFVRITPLII NLKQIQDPML 180
  181 YWGFLDGRAK PFRKGKWKEP EWNLCDRYLP YQLGGGYVLS YELIRFLAIN AQLFRHYRNE 240
  241 DVSVGAWIGG LDVKYVHDPR FDTEWRSRGC NNEYLITHKH TEQEMQEMFE NLKKTGKLCA 300
  301 KEFQKHPSYV YDFSKAPSEC CTRVNGSNIP

Type	Start	End	Confidence
Signal Peptide	1	21	0.92
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	330	0.99