YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	fat-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVDKNASGL RMKVDGKWLY LSEELVKKHP GGAVIEQYRN SDATHIFHAF HEGSSQAYKQ  60
   61 LDLLKKHGEH DEFLEKQLEK RLDKVDINVS AYDVSVAQEK KMVESFEKLR QKLHDDGLMK 120
  121 ANETYFLFKA ISTLSIMAFA FYLQYLGWYI TSACLLALAW QQFGWLTHEF CHQQPTKNRP 180
  181 LNDTISLFFG NFLQGFSRDW WKDKHNTHHA ATNVIDHDGD IDLAPLFAFI PGDLCKYKAS 240
  241 FEKAILKIVP YQHLYFTAML PMLRFSWTGQ SVQWVFKENQ MEYKVYQRNA FWEQATIVGH 300
  301 WAWVFYQLFL LPTWPLRVAY FIISQMGGGL LIAHVVTFNH NSVDKYPANS RILNNFAALQ 360
  361 ILTTRNMTPS PFIDWLWGGL NYQIEHHLFP TMPRCNLNAC MKYVKEWCKE NNLPYLVDDY 420
  421 FDGYAMNLQQ LKNMAEHIQA KAA

Type	Start	End	Confidence
Cytoplasmic	1	124	0.91
Transmembrane Helix	125	143	0.63
Non-Cytoplasmic	144	144	0.40
Transmembrane Helix	145	167	0.68
Cytoplasmic	168	289	0.53
Transmembrane Helix	290	310	0.62
Non-Cytoplasmic	311	317	0.56
Transmembrane Helix	318	338	0.75
Cytoplasmic	339	443	0.72