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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: hmr-1
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.73
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPETRQGRSS RGNCVIFGSS KRLWVTLLGF CFVLSTLIGG AEAFTDLSLP FGLEPSVAKS  60
   61 RFSSLVGGVR ARDIHVFVMK NISEDTPVGT VLETFKAHDP SNPMYNFSFR INRQSDPKRQ 120
  121 FTIDQDGTLR VAHTLDREDI AVYNLIIEAY DNSNNIGRQM VAVYLQDVND NGPEPYTVPR 180
  181 PCIFRENTPV NQLGTCEIRA TDRDTAEFGP PFTMEVSPSF KYSQYLNVIF NANGDGGNGS 240
  241 MTITPLQEFD REAPVPGKIL EIPLILADRA GRRNEASVHV IIGDLNDNTM HDGRMTIHVN 300
  301 SYLGRLKETV IGRVYVDDAD DWDLGDKTFS WKDSRPGFEL SDKGSITMAG EMAAGTYTMS 360
  361 ANVHDNARDE DAVGYVTVIV NAVPQIAFDN QGSVQLLIAE ETPLQLPDDF IRADSNGQSL 420
  421 MDTFKQEMTA YMGGDVTVDV FSVQVGIATL QTRDVPVLNV RFNARGSTYR DTAQLNGLIA 480
  481 AHRADLQRKL NVEIVGVGID MCKFTQCDAG CQTLNSADYD GIVVSANSTV IVGVNATSRD 540
  541 DCTCPVWRAP PACQHSLCHN DGVCHNTNPG FFCECRNDGL KGARCQGTTR SFGGNGFAWY 600
  601 KPMPACTSLN ISFSFMTTQS DALLFYNGPL ETLRNDTHIE YSDYIFIQLR GGRISLEVSM 660
  661 NGQSRSSLEV ASTALNDGTW HDISVNQEGK RVELVVDNCR FLGAGADDSS CRAELYTPDD 720
  721 DERLNIVTPV QIGGLAPLSG QDYPQTIPRA GLNGCVRNLN VNGDQYDLAT PAFEQNSEKG 780
  781 CRLWGATCDS NSVDSLNHCI HGDCFADVQG SGAMVAKCVC DPGWGGARCE RRMEWIQFAQ 840
  841 GAFIEYSPRI AFPEQVSDIE LLFISGKVNG APAELSFGTD SQQSYVSTNL ESGQNGVTAA 900
  901 GKFDIGTGGR RARQELRVSE VLLKENASYW LQFTRNPTRA SLSIDNAYTV STQLDKGEPF 960
  961 SLQVNQITLG TQGQNKGFQG CIGTYRWSKQ NLPLKRGGAM DENEESIVSI SNMAGVQDGC1020
 1021 DLRITCADLP AGYCGGSFVC VDFWKGPFCT CNDGANAILG DDGQVVGCGE TLAVSKLGIS1080
 1081 SPAIILILVS LALLILLVMM MVVYTRRSPG AFENVRPEEM NRDNLRQYGV EGGGEADNDQ1140
 1141 YSMAGLRKPV MPLDTGMGPA IGGHPPHYPP RGMAPPKDDH ELNSKIKDLE TDQNAAPYDE1200
 1201 LRIYDDERDN ISVVTLESIE SAQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle