YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx-20
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAQALPQHS ASSNKTGGSP GARVPRMVFA EIVGTLSFLQ PQADDDIFDR LHYYYTTTFL  60
   61 LLTAVLISLK MFGGRPIECW LPAEYKSSWE DYTEMYCWAR NTYVTAFEDD NLPEVVNREY 120
  121 TMVSYYQWVP FFLVYVAFSF YAPCLIWRLF YDKSGIRLKD IMGFANDKAN VVPTQRTANI 180
  181 RGLSAHLSSV FKHRFRIGEK HPYHHKVFRI FNVRYYESYL TYLYLAIKCL FLMNVLTQMY 240
  241 FMSRFLELDS HRYYGYGIFY DLIMGKGWKE SSNFPVVTYC DMQIRILGHV QRHTVQCVLV 300
  301 INIFTEKIFF ILWLWYTMLS LISFGSILSW IFASIPFNQR RQFIARRLEL ADVNFEKSRF 360
  361 KQELDEFVRD YIKIDGIFVL RMITIHSGIL MCTDIVDTMW DQFLQESGHA TIREILEDKS 420
  421 YGDDYDRSAS AGGLSIEPSL RRKTSVLVPL MSREDLHLDQ SPTTPAPQFL RPPSSRMASA 480
  481 ANV

Type	Start	End	Confidence
Cytoplasmic	1	50	0.88
Transmembrane Helix	51	73	0.85
Non-Cytoplasmic	74	130	0.88
Transmembrane Helix	131	151	0.93
Cytoplasmic	152	219	0.90
Transmembrane Helix	220	241	0.63
Non-Cytoplasmic	242	311	0.60
Transmembrane Helix	312	337	0.84
Cytoplasmic	338	483	0.54