YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE25108
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPISEPTWAE FPFFFKSAVV ELLPYKNRCC LRKCSKPNQF LVDSTPNHLH DVAIHTCENY  60
   61 TVFTYSDSPD TVFTLKYLKN IGENDLKIEY SESSVLFVPG KNQKFIFKTS IHVENVAADL 120
  121 RLIVVLMLEP LENLWRIADL GGFWRSMRRT YPSRVFVGDT FCYWSGMTLA VVSILGHFSK 180
  181 ILMLFFIPQI INFLYSIPQL FHLVPCPRHR LPKYDPKTDT VSMSVAEFKK TDLKRVGALF 240
  241 ITICKSIGML HVKEVEKDGE IYLQINNLTI INLVLKFAGP LHEKTLNDVL MSIQILCSLL 300
  301 AFFIRFYLAS LFYDVVE

Type	Start	End	Confidence
Cytoplasmic	1	154	0.97
Transmembrane Helix	155	176	0.92
Non-Cytoplasmic	177	183	0.68
Transmembrane Helix	184	203	0.88
Cytoplasmic	204	288	0.89
Transmembrane Helix	289	309	0.85
Non-Cytoplasmic	310	317	0.75