YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	acr-14
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.54
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFVFFILLT FYIQVKGSVD EYRLLQYLKE NYDSFERPVE NSSAPLDVKV RFLLNQIMDV  60
   61 DEKNQVMSIL AYMDYHWNDY KLTWDPKLFG GIRDVRFSGD DDASFKLWRP DVLLFNSVSE 120
  121 SFDSTYSSRF IVSSNGDVQQ NPPGIFRFVC QIDVTYYPFD KQTCFLKLGS WTYNGQYINL 180
  181 DFLLTQIIGL HGIPIVVEPE RSSTNYASYF VNESIDLQVY LQNGEWDLEG TPGKRVVQKF 240
  241 GTDEYHELYF YIHIRRRTLA YGINLIIPSL VISMMTILGF TLPPDACEKI TLETTVLLSV 300
  301 IFFLQMVSST SPPQSQSVPI LAAFFSCCLM LVACSCVFTV LTLSLHHRKP ETHEMSPTMR 360
  361 KIFIDWLPYI LCMCKPDHPK TPKPKVLGKS IAPIHRLSTI PMLNLPRVSQ TTFPDKNVFV 420
  421 YHEVPAVIKN TSRICAELLI IERDIEKMLD KIEEDTKEDM LRSEWRFAAM AVDRLCLYVF 480
  481 SAFITMITCG LIVPHILANI

Type	Start	End	Confidence
Signal Peptide	1	17	0.54
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	259	0.85
Transmembrane Helix	260	282	0.90
Cytoplasmic	283	289	0.77
Transmembrane Helix	290	309	0.77
Non-Cytoplasmic	310	319	0.81
Transmembrane Helix	320	343	0.93
Cytoplasmic	344	474	0.99
Transmembrane Helix	475	498	0.92
Non-Cytoplasmic	499	500	0.96