YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mrp-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.76
Transmembrane Helix	39	59	0.73
Cytoplasmic	60	70	0.91
Transmembrane Helix	71	92	0.89
Non-Cytoplasmic	93	107	0.78
Transmembrane Helix	108	129	0.83
Cytoplasmic	130	138	0.66
Transmembrane Helix	139	159	0.75
Non-Cytoplasmic	160	173	0.70
Transmembrane Helix	174	194	0.65
Cytoplasmic	195	295	0.75
Transmembrane Helix	296	313	0.52
Non-Cytoplasmic	314	332	0.70
Transmembrane Helix	333	354	0.91
Cytoplasmic	355	409	0.80
Transmembrane Helix	410	432	0.79
Non-Cytoplasmic	433	436	0.68
Transmembrane Helix	437	458	0.88
Cytoplasmic	459	519	0.96
Transmembrane Helix	520	542	0.89
Non-Cytoplasmic	543	554	0.81
Transmembrane Helix	555	577	0.80
Cytoplasmic	578	965	0.99
Transmembrane Helix	966	988	0.86
Non-Cytoplasmic	989	1027	0.86
Transmembrane Helix	1028	1050	0.85
Cytoplasmic	1051	1102	0.90
Transmembrane Helix	1103	1126	0.86
Non-Cytoplasmic	1127	1528	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPLVRELVC GSDYELLETG WRNNSNIPQV TNCGQHTDFS TIPTLFLVIF SPILFYELYK  60
   61 SRNSYLRSFS AISLRIIFCC LLVVDLTATV IYDFYLLFTK SPLYNAIHFY GDLVQYAGFC 120
  121 LALVLTIACR NRGIITSGVI TLYWLLVVVC GVPELRYYIT GRLYKEYEIH SCRAALYVFA 180
  181 YVCSALELFL SCFADTPSNG YIGKNSCPEY TASFLNQLTF QWFSGLAYLG NKKSLEKEDL 240
  241 WDLNERDKAE NIIPSFIENL IPEVEGYRRK IKKNPEAAIP KNHPSILIPI FKTYKFTLLA 300
  301 GGCYKLMFDL LQFVAPELLR QLISFIEDKN QPMWIGVSIA LLMFLSSLLQ SMILHQYFHE 360
  361 MFRLGMNIRS VLTSAVYTKT LNLSNEARKG KTTGAIVNLM SVDIQRIQDM TTFIMLFWSA 420
  421 PLQILLSLYF LWKLLGVSVL AGFVILILLI PFNSFISVKM RNCQMEQMKF KDERIKMMSE 480
  481 ILNGMKVLKL YSWEKSMEKM VLEVREKEIR VLKKLSYLNA ATTLSWACAP FLVAVLTFGL 540
  541 YVLWDPENNV LTPQITFVAL ALFNILRFPL AVFAMVFSQA VQCSASNTRL KEFFAAEEMS 600
  601 PQTSIAYGGT DSAIKMDGGS FAWGSKEEDR KLHDITFNIK RGQLVAIVGR VGSGKSSLLH 660
  661 ALLGEMNKLS GSVQVNGSVA YVPQLAWIQN LSLRNNILFN RPYDAKLYQN VIENCALVQD 720
  721 LESLPAEDRT EIGEKGINLS GGQKQRVSLA RAVYQNAEIV LLDDPLSAVD SHVGKHIFEN 780
  781 VISTATGCLG TKTRVLLTHG LTYLKHCDQV IVLKDETISE MGTYQELMNS NGAFSEFLEE 840
  841 FLLEESKHKG RSVSFGEDSK EVNELLRDLD QVSPAIRQRI QSQMSQEIEK TDDKNAEIIR 900
  901 NGLHKDEQTA HSSIGKSEEK ESLLGAISPK EKTPEPPKQT KTQLIEKEAV ETGKVKFEVY 960
  961 MSYFRAIGIK IALVFFLVYV ASSMLGVFSN LYLARWSDDA KEIALSGNGS SSETQIRLGI1020
 1021 YAVLGMGQAT SVCAASIIMA LGMVCASRLL HATLLENIMR SPMAFFDVTP LGRILNRFGK1080
 1081 DVDGVDTDIP RTMSMFIRTA VSSIEIIAII LWATPLAISL LLPLFIRFYV STSRQLKRLE1140
 1141 SASRSPIYSH FQESIQGASS IRAYGVVDKF IRESQHRVDE NLATYYPSIV ANRWLAVRLE1200
 1201 MVGNLIVLSS AGAAVYFRDS PGLSAGLVGL SVSYALNITQ TLNWAVRMTS ELETNIVAVE1260
 1261 RINEYTITPT EGNNSQSLAP KSWPENGEIS IKNFSVRYRP GLDLVLHGVT AHISPCEKIG1320
 1321 IVGRTGAGKS SLTLALFRII EADGGCIEID GTNIADLLLE QLRSRLTIVP QDPVLFSGTM1380
 1381 RMNLDPFFAF SDDQIWEALR NAHLDSFVKS LQEGLHHHIS EGGENLSVGQ RQLICLARAL1440
 1441 LRKTKVLVLD EAAAAVDVET DSLLQKTIRE QFKDCTVLTI AHRLNTVMDS DRLLVLDKGC1500
 1501 VAEFDTPKKL LSNPDGIFYS MAKDANVV