YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE25010
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	52	0.55
Transmembrane Helix	53	78	0.80
Cytoplasmic	79	90	0.53
Transmembrane Helix	91	113	0.90
Non-Cytoplasmic	114	120	0.48
Transmembrane Helix	121	143	0.89
Cytoplasmic	144	149	0.46
Transmembrane Helix	150	171	0.90
Non-Cytoplasmic	172	178	0.52
Transmembrane Helix	179	202	0.86
Cytoplasmic	203	209	0.51
Transmembrane Helix	210	230	0.93
Non-Cytoplasmic	231	270	0.56
Transmembrane Helix	271	292	0.85
Cytoplasmic	293	340	0.60
Transmembrane Helix	341	361	0.95
Non-Cytoplasmic	362	367	0.75
Transmembrane Helix	368	390	0.87
Cytoplasmic	391	399	0.79
Transmembrane Helix	400	423	0.89
Non-Cytoplasmic	424	431	0.88
Transmembrane Helix	432	454	0.92
Cytoplasmic	455	472	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFLYEMVSP RAPKIRRVEA FSEMGQSSEV HPEFGFPQIR KTSSFVFWNR TRLYIMVLTL  60
   61 ACLTFIQMNT LTFNFTVIYT HWFERNTEKS LLFSGAAIGG LIGLIPAVPL ISSLGLGNVQ 120
  121 TISGIISAFG AFLFPLAVSI GFYTSLLCRI LQGVGSAIMF TTVGVVPGVW APSNEANTFM 180
  181 AILSCALQLS NIICMPVSGL LCESALGWRS IYYLFGGLTF IIYIVFWFTY SDDPKLHRNV 240
  241 SQKELGKIST GKIEKIKEPV PYLAICTDPT VLITWTSCFG GNMAFFALSL YGPTYLREIL 300
  301 KFDVRETGFL SALPFILSAI VKFGAGQLSD RMTFLSEKAR FVFFAATSQI GFAVGLVVMA 360
  361 FTSDRLIAQI AFNFAIVSSG LNIMGVIKCI QLRCRQHVHF AIAVISFTAY VVQFLAPIIV 420
  421 SIICPDNTPE QWTILFLFIT GVIIVCNAGF PFITRSDPAA YTKQINVENV EK