YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE24978
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.90
Transmembrane Helix	50	69	0.90
Non-Cytoplasmic	70	112	0.88
Transmembrane Helix	113	133	0.86
Cytoplasmic	134	141	0.88
Transmembrane Helix	142	165	0.91
Non-Cytoplasmic	166	172	0.73
Transmembrane Helix	173	192	0.92
Cytoplasmic	193	198	0.86
Transmembrane Helix	199	222	0.89
Non-Cytoplasmic	223	226	0.86
Transmembrane Helix	227	246	0.95
Cytoplasmic	247	314	0.99
Transmembrane Helix	315	333	0.95
Non-Cytoplasmic	334	342	0.79
Transmembrane Helix	343	365	0.92
Cytoplasmic	366	371	0.92
Transmembrane Helix	372	392	0.93
Non-Cytoplasmic	393	398	0.84
Transmembrane Helix	399	421	0.84
Cytoplasmic	422	432	0.77
Transmembrane Helix	433	456	0.84
Non-Cytoplasmic	457	462	0.71
Transmembrane Helix	463	484	0.92
Cytoplasmic	485	504	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSVKVTPV KDIAHLEEAH YVEEVDVRND KIKLESIFEG LGSFGRFQQI QFILICIPIA  60
   61 FVSMHVMSWT FVVSPARKIC NETNETRIDG CEELAYSASD RWEMDGDNGW IRATVQAVYF 120
  121 IGQMIGSFTC GVMADKIGRK KVLFWCLVLQ VVCALLLIVA PTWWIYAILK AGTGFTQPGI 180
  181 YGVAVVLGIE LVGKKYRSFI AVIANVFGVI GGVLLAVMAY FIVDYRLLHA SIAIPSLIFI 240
  241 TYYWMIHESA RWLVSQEKYD DANVVLCATA NWNKKTIPKN WAEKIEKKMD VTATKKKDSF 300
  301 GVFDLIRTPQ MRKRTIANFV MWPVTTMMYY GLTMRSDVGG GSLFVTFVTS QLMELPAVII 360
  361 VALLIDRLGR RIMYSGAIFT AGMLLLASWL THDLIPSQYA VIMLMVAKGA VSVAYTVMYT 420
  421 YTSELFPTVI RNTAVGCCST IARFGAISAS FIAFFLVDRF GRIVMIIPFT ILALCASIVS 480
  481 WTMLPETVNQ QLPDSISEVE GNKI