YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srh-241
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNCISGAGI PDTRYLSSPN FISFTLHCLT FLEIPVLSYG AYCILYKTPS RMKSVKLLML  60
   61 NLHFWSCLSD LVISFVGLPY ILLPAPAGYG LGLLDSPQIL VYLMVTFIAA LTASVLAIYE 120
  121 NRFYTLFAQN SWWKKVRKPF LFSIYTLVPL IFLPPYFDLP EQESARQLVL SKIPCQPPFD 180
  181 FKHREIYVLA LDYDVPVYCI AFGTLVLGVS ITVFGWLIFH MLWFGTLSSS NSIRTLNMQR 240
  241 RFAISLTIQS TFMISVVLTP VLTILWIIFK WYHNQMLNNF IFITLSLHGV GSTIVMICVH 300
  301 RPYREFTFSK LCYFSKKWRA SVIEKRSGGT LNVVL

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.83
Transmembrane Helix	23	46	0.78
Cytoplasmic	47	61	0.90
Transmembrane Helix	62	83	0.92
Non-Cytoplasmic	84	98	0.90
Transmembrane Helix	99	119	0.96
Cytoplasmic	120	138	0.93
Transmembrane Helix	139	157	0.94
Non-Cytoplasmic	158	199	0.95
Transmembrane Helix	200	224	0.89
Cytoplasmic	225	244	0.89
Transmembrane Helix	245	269	0.90
Non-Cytoplasmic	270	279	0.85
Transmembrane Helix	280	300	0.94
Cytoplasmic	301	335	0.98