YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	glc-1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATWIVGKLI IASLILGIQA QQARTKSQDI FEDDNDNGTT TLESLARLTS PIHIPIEQPQ  60
   61 TSDSKILAHL FTSGYDFRVR PPTDNGGPVV VSVNMLLRTI SKIDVVNMEY SAQLTLRESW 120
  121 IDKRLSYGVK GDGQPDFVIL TVGHQIWMPD TFFPNEKQAY KHTIDKPNVL IRIHNDGTVL 180
  181 YSVRISLVLS CPMYLQYYPM DVQQCSIDLA SYAYTTKDIE YLWKEHSPLQ LKVGLSSSLP 240
  241 SFQLTNTSTT YCTSVTNTGI YSCLRTTIQL KREFSFYLLQ LYIPSCMLVI VSWVSFWFDR 300
  301 TAIPARVTLG VTTLLTMTAQ SAGINSQLPP VSYIKAIDVW IGACMTFIFC ALLEFALVNH 360
  361 IANKQGVERK ARTEREKAEI PLLQNLHNDV PTKVFNQEEK VRTVPLNRRQ MNSFLNLLET 420
  421 KTEWNDISKR VDLISRALFP VLFFVFNILY WSRFGQQNVL F

Type	Start	End	Confidence
Signal Peptide	1	22	0.95
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	275	0.99
Transmembrane Helix	276	297	0.93
Cytoplasmic	298	304	0.80
Transmembrane Helix	305	324	0.88
Non-Cytoplasmic	325	338	0.80
Transmembrane Helix	339	362	0.89
Cytoplasmic	363	432	0.99
Transmembrane Helix	433	454	0.85
Non-Cytoplasmic	455	461	0.93