YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lev-1
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLGGGGGCG AGGTWLGFLV FLAVSLRNHS TCEDIDAEDR LMVDLFRGYN SLVQPVRNRS  60
   61 ELPMIVKIGM QLVLLINVDE KEQVMHTNVW LTMKWDDFQL KWDPRDYANI TQIRVAPEKV 120
  121 WLPDIVLFNN ADGNYEVSFM CNVLILSTGT VLWVPPAIYK SSCIIDVEFF PFDDQLCSLT 180
  181 FGSWTYNRDE IKLDFLTSDR VDFSEYSTSS IWDMMDGPAV LTSDRSRIEF QIRIRRKTLF 240
  241 YTVVLILPTV LMAFLNVTVF YLPTASGEKM GLTMNVLLSI VVFLLLVSKI LPPTSSSIPL 300
  301 VAKYLLLTFV LNIITIMVTT IICNIYFRSP ITHRLPPWVR KVFLDILPLL MCMQRPHRKN 360
  361 VIQRSHRRLL ETGPSVEENP MRSGEHHPLC RHTHNQDSCR RVRIQSDELD DELSPEAQRA 420
  421 IDAIEFITEN RRDEEITKQF RDDWKFIASV VDRFLLYGFF GATVGGTIGI IFTAPSVFET 480
  481 FDENATLVKL KQLYDMGLAN DTVLGIF

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.55
Transmembrane Helix	7	26	0.59
Cytoplasmic	27	238	0.62
Transmembrane Helix	239	262	0.91
Non-Cytoplasmic	263	270	0.54
Transmembrane Helix	271	291	0.91
Cytoplasmic	292	303	0.53
Transmembrane Helix	304	327	0.89
Non-Cytoplasmic	328	337	0.55
Transmembrane Helix	338	354	0.49
Cytoplasmic	355	453	0.88
Transmembrane Helix	454	474	0.90
Non-Cytoplasmic	475	507	0.90