YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lin-44
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAAPFDFFF QSTALSTFFI LCSLATNEIP TISGAPAGKI VQPPKPNILK QGCPSDLLHS  60
   61 RALRSIQLAC RTHPATVISA FEGVQEGLQN CANRLRFQQW DCSEAGNIMH DPPLLRQGFR 120
  121 ESSLIWALSS ASAAWGVATA CAQGWIDDCA CNNQMGQNEY EFGGCTHGVQ HGITASRKLL 180
  181 TKVGAVNTLL RKVEKHNLKA GRLAIKKTLI SSCKCHGVSG SCQQKTCWKR TATLEHITDY 240
  241 LVEKYARAKL YTDDSVVKTT DLIYLEASPD VCKAKSVAGR VCAWRNETHT QGDCDRLCCG 300
  301 NGFSIRHEVV RVKCDCEFVW CCNLVCKDCI QHRWISTCNG TPPKSLIF

Type	Start	End	Confidence
Signal Peptide	1	25	0.89
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	348	0.96