YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	twk-20
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHQIDGKSAR ALLLILSTFT YLLFGAMVFD KLESEKDTWV RDEIERITDR LKHKYNFSER  60
   61 DLHLFEAIAI KSIPQQAGYQ WQFAGAFYFA TVVITTVGYG HSAPSTNAGK LFCMIFALFG 120
  121 VPMGLIMFQS IGERVNTFIA YSLHKFRDSL HQQGFTCLQE VTPTHLLMVS LTIGFMVIVS 180
  181 GTYMFHTIEK WSIFDAYYFC MITFSTIGFG DLVPLQQVNA LQDQPLYVFA TIMFILIGLA 240
  241 VFSACVNLLV LGFMASNADE VTAAQREPPS AIVLERFTRN SLVDSQIFNI QKHSTVGVLP 300
  301 GRPRRMYSIV PNSTADVHLR RRSTRRSIQD TVCCGCFKPR PPRHRFSLTR RPTNISHLVD 360
  361 LELY

Type	Start	End	Confidence
Cytoplasmic	1	10	0.86
Transmembrane Helix	11	29	0.94
Non-Cytoplasmic	30	82	0.95
Transmembrane Helix	83	101	0.94
Cytoplasmic	102	110	0.79
Transmembrane Helix	111	131	0.94
Non-Cytoplasmic	132	163	0.96
Transmembrane Helix	164	185	0.93
Cytoplasmic	186	193	0.83
Transmembrane Helix	194	215	0.89
Non-Cytoplasmic	216	227	0.87
Transmembrane Helix	228	251	0.89
Cytoplasmic	252	364	0.98