YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srd-65
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDILQYLFRF YWPPFYLLSL CLFSTMYILI YNFTTNVLKA MRYFLYASCT ATFVSLTLAF  60
   61 GTQTRNIDNE NSMGLLCDGF CKFLGPTFCA TCYKAYATSV LTVNLINLHT LYYRTVCLKL 120
  121 INAQEIGRNT LIFSWHYLFI IAYLTSTLIP PSDHLAVYNE TLAHYPEYDY TPYLNFGGFS 180
  181 QAQKVYLDNS TVAMFLVTLY FPMIGSYWKH QAMKLLKPHV SPNTSDATRV MFRKMIIGLN 240
  241 FQIFLPMLSY IPVVFLFILI QVTGHQFLIS QYTITCLGAL PCFLDPIFQI YFITPYRNAV 300
  301 RAFFVRKPSA DGSWATRVSA VNSVA

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.65
Transmembrane Helix	12	34	0.88
Cytoplasmic	35	42	0.60
Transmembrane Helix	43	63	0.89
Non-Cytoplasmic	64	92	0.59
Transmembrane Helix	93	113	0.55
Cytoplasmic	114	131	0.85
Transmembrane Helix	132	149	0.90
Non-Cytoplasmic	150	185	0.90
Transmembrane Helix	186	208	0.85
Cytoplasmic	209	238	0.94
Transmembrane Helix	239	260	0.93
Non-Cytoplasmic	261	268	0.78
Transmembrane Helix	269	293	0.79
Cytoplasmic	294	325	0.89