YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx-6
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQVGAINS VNALISRVFV QPKGDLADRL NSRVTVVILA VSSALLLSSH FIGDPITCWT  60
   61 PAQFNAQWVN FVNQYCFVHG TYFVPLDQQL AFEEEERTKV SIQYYQWVPY VFALQAFLFY 120
  121 IPRFIWKAMI AYSGYDLAAA VKYVDRFWSE NRDKDDKFKT RLAAFEGRPS VYIWDGIRLA 180
  181 RKKRSRNMAL FYTLSTVWQA VNAWIQFYIL TQLLDSSIYT LWGPSILGDL LQGNDWQTTG 240
  241 HFPRIVHCDF NRRRPASVQL DTVLCVLTLN IYYEKLFIFL WFWLVFVAVV STVNCFKWIY 300
  301 YLCNKTKAQK TIKNYLSTAP IKSTISDDQF FSALGEDGLF IMDQMALNLG DIPASYLTIS 360
  361 MRNICQDFIE SEDYIDEERT PFVKSIKHT

Type	Start	End	Confidence
Cytoplasmic	1	33	0.92
Transmembrane Helix	34	53	0.88
Non-Cytoplasmic	54	106	0.90
Transmembrane Helix	107	126	0.80
Cytoplasmic	127	187	0.97
Transmembrane Helix	188	210	0.90
Non-Cytoplasmic	211	278	0.93
Transmembrane Helix	279	300	0.94
Cytoplasmic	301	389	0.98