YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	xol-1
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVEANSERR VKILGIDRSE NSPVLTYMET EDDPNFRNSK LAAAPHTVHM MDSGFLAINR  60
   61 QCLVKGKAIL AREPKSSNEH MIDDLPKHAH DQHTLSILRD FIDQLKLHNV YEINFYDPLD 120
  121 SSGKLAVIPM LIALWKCMLA SETDICDQEV LKSIMNSVIA KFELQIPCKN AVIDATLSGS 180
  181 REEVHIIAED GSLENSNGTT EHFNKKHDLV FVKTDLHPED FTPQMFPSQA KAKLLRDAFN 240
  241 NEEDEDTFPD ILVPAYMTAH SKNRVRQEDY TCLEVEFDSQ VALEKLMNEH EQVEGFEVQQ 300
  301 GGILVALKKD SFFDDELIEK IAYSAQYYLS MTHFSNRISI PLFSSLVFLT VSIVINAMCH 360
  361 KSIFCKRVIS RLPFPHCQIL KLSHFSTGRT FLSYLSIIAK CTPISHINQS NILPAQNKIF 420
  421 AIKQFS

Type	Start	End	Confidence
Non-Cytoplasmic	1	339	0.97
Transmembrane Helix	340	360	0.84
Cytoplasmic	361	426	0.77