YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	acy-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.99
Transmembrane Helix	30	51	0.89
Non-Cytoplasmic	52	80	0.96
Transmembrane Helix	81	100	0.95
Cytoplasmic	101	109	0.80
Transmembrane Helix	110	131	0.93
Non-Cytoplasmic	132	148	0.92
Transmembrane Helix	149	167	0.94
Cytoplasmic	168	172	0.92
Transmembrane Helix	173	194	0.91
Non-Cytoplasmic	195	201	0.78
Transmembrane Helix	202	223	0.90
Cytoplasmic	224	615	0.96
Transmembrane Helix	616	634	0.89
Non-Cytoplasmic	635	645	0.75
Transmembrane Helix	646	664	0.92
Cytoplasmic	665	672	0.68
Transmembrane Helix	673	693	0.94
Non-Cytoplasmic	694	700	0.92
Transmembrane Helix	701	724	0.89
Cytoplasmic	725	731	0.87
Transmembrane Helix	732	754	0.91
Non-Cytoplasmic	755	761	0.84
Transmembrane Helix	762	782	0.95
Cytoplasmic	783	1080	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTVMEMSTT RAEIRSVLVK HWRSLDKARL HTIHLWLLLY AAAQIFIEYY FSEVYAVLML  60
   61 EADDRPQSKE NHEKVKKWSP FCFYASIFFI AYLILTCFAI RIRQPKEGMG LVLVSLSLCV 120
  121 LLPAFSWILH LPVVIFVSRE RIHTNEHDHS ALYTSLCIAS VIQFFILPRH RRIFFVVAVS 180
  181 WIVANFLLIV AINWDALNVN TLFMCSCLSL FLHQGVIALV GVVADSNEAG NRAEIARKLT 240
  241 EAVYRRTELE TLKDRQEQLL LSVIPAYLAD QVSKSIIQSS STGSTVEVPR TGKNNTKNHK 300
  301 LFHDLHVQVH DNVSILFADI VNFTVLAAQL TAKDLVRTLN ELYSKFDRDA QRLQCMRIKF 360
  361 LGDCYYCVSG MPVNRPNHAD MCVVMGLEMI NTIKQVRIAT GVDVNMRIGV HTGSVLCGIM 420
  421 GLRKWQFDIW SDDVTLANHM ESAGVPGAVH ITKSTKDMLL GDYCIVDANT DDPHVVSYGQ 480
  481 PTYHILPDKT SAIERTASIY RNSRLSTSPA LQSRMSMKAK VSKMVEFWGA ETPFANFTKK 540
  541 KFSASHDPAL ITDEIARRPT YINTIPSMTL IENNLTNFSF NNINSMFNCE LPTIPASPKL 600
  601 LWPFSRKSIT CNLSDCVLLT FVCIPSAFAN LLLCSLYCPS DVLQQISLQQ FFTIIGLAML 660
  661 SLLGRVCSYA GPLITMVAFL LSSCIPIGPH IIIKKSKLEG VMAFNSLIFL PSCVSHLVSV 720
  721 FILYRLPYSH RCFLFFADFV IFQVLLSLFP AYGAEVYVGY MGYHLSVVSI SLSLLVVLLF 780
  781 FIDWITNYER KRESACHVSF QNEERDVETM QDINKILIEN ILPSSVAAKF LSPDRAVNEL 840
  841 YARQHENVCV MFASIPNFKD FWSEWDTNRK LECLRLLNEI VCEFDKLLSK PKFSSVEKIK 900
  901 TVGSTYMAAA GLNESEADYD DIYLEKQNSG KYNNNIRHGN MAFRNANLMI EFALAMSQIL 960
  961 DALNRDSFQN FELRIGMSVG PLVAGVIGAQ KPQYDIWGNT VNLASRMDTH GEPRKIHATT1020
 1021 DMGRVLQTGG YRVQSRGKIR VKGVKEPMET FLIEVDSKRN SSVSGEQQNH SNNNNCHSTL1080
 1081