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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: cam-1
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.71
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGTSTGQRP YIRLTSQLRN ATKSSGDEVR FKCEALGTPP LKFIWLKNNG PVEKTKRVKI  60
   61 RDKENSSRLV ITQLDVLDSG YYQCIVSNPA ASVNTTSVLR VNNVPDAVKL SQKKGSHHST 120
  121 KHIAFDEYED YEMMDRGRLP DEEDADLYRV PDSAAGSNYA PVAVSERWLD GIKYRVGDCV 180
  181 QYRGEACRQY LSNKFVMMTN ESREEMYDID RNLRAAMLFI NGAPTISQKC RQLSQAVACH 240
  241 HMYKVCESDS NNQIVSICKH DCDVIQNDEC PSELALAAQH ELVGDTPKAL FPLCSRLSST 300
  301 SNCIPVMSTA LQSSPVAEVN RGHLTHWCYV NSGTQYEGTV AQTSSGKQCA PWIDSTSRDF 360
  361 NVHRFPELMN SKNYCRNPGG KKSRPWCYSK PMGQEEYCDV PQCPSDMYPH LNDKKVEGST 420
  421 KGGVSESVTA LWDSLDPTMQ VALVGGGVFF SLLLLLLFCC ACCCRAKKKS QKTRHQNAHC 480
  481 SSAPSVINSA ANSAYYRKLN GTSTPIMGRV PPHVEMTSLL PSAQHLGPPP YPMDQHLQQA 540
  541 RRFPSQEPID DNSYKVFEIT PSQLSVREKI GEGQFGVVHS GIYTSGLFAP EPMAVAVKKC 600
  601 RHDATNAERA QLEQEIRAVA TFDHPNVIKL IGVCYMDNSL LAVFEYMVHG DLHELLKVRV 660
  661 PPADHDMGGI TEANAEFLYI ATQIALGMEY LASMSFVHRD LATRNCLVGD TRTIKIADFG 720
  721 LMRTSYGSDY YKMLHRSWMP VRWMSKEAIE QGRFSEASDV WSFGVTLWEI WSFGRQPYEG 780
  781 ASNQQVIELV ANRHLLECPH NCPTNIYSLM VECWHENIER RPTFSEIRSR LQSWSLASPA 840
  841 HSILQQHNNR AGSHSGSSGA GRPPTHQRGY PSQKLHRRVE GASPLMKRHD ANYAYSEDGD 900
  901 SD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle