YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-6
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQIVLFLFI STLFGNAYSY KFLVISPVYG FSHMKYMAEL ANHLARAGND VTYFQPFVVD  60
   61 EYHDHTLIKE KSIKIWNYYH DELGRQHIPS QGCMRDAWHS SWYQSDAGAA ILLSKYLFPA 120
  121 FEHMCRKMFE DTELHYDLKS RQFDVVLSEA FDFCGLYLAS YLEMPSIIST FTGNRLNALA 180
  181 PVLGEPSFLH YLPAPTSQYG HESTIFDRLN DVWHKIWSSY GFAQLFEMQY QQVSKLTNGK 240
  241 VKHWKDIIHD VTYHFSNSNP YLDFVIPTIP KVVPIGGITV DHDYWSTNGN HSELLEHVLN 300
  301 ARKHNVFISF GSMVRSVDMP KEFKKSMMKV FSDHPNITFL WKYELPNDQE FLRILPTNVH 360
  361 VAKWFSQSAL LSDQRVNLFV THGGLGSTME LARAAKPAIV IPLFADQPGN AKMIERHGSV 420
  421 EIFSKLDIPN SKKLSSLIQK MLNTKYYQQN ANRLADTLRF QPITPTDLMV KHAENAARFG 480
  481 KMPNLVPHAK DMGFFEYYNI DIIFIVFLLV WLLFSVVAHV FSKLKLSLKI KVE

Type	Start	End	Confidence
Signal Peptide	1	19	0.97
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	501	0.99
Transmembrane Helix	502	521	0.95
Cytoplasmic	522	533	0.92