YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	yop-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVPPQVQKV LDDVDKQLHE PSTVTNVLAT VEQKTGVKRL HLVLGVVGLQ ALYLIFGHSA  60
   61 QLVCNFMGFV YPAYMSIKAI ESSNKEDDTQ WLTYWVIFAI LSVVEFFSVQ IVAVFPVYWL 120
  121 FKSIFLLYLY LPSFLGAAKL YHRFVKPVAA RHSGSIDAKI GNFADRVNSA AGKLANEVRD 180
  181 HME

Type	Start	End	Confidence
Non-Cytoplasmic	1	50	0.56
Transmembrane Helix	51	74	0.73
Cytoplasmic	75	90	0.69
Transmembrane Helix	91	114	0.87
Non-Cytoplasmic	115	119	0.60
Transmembrane Helix	120	142	0.75
Cytoplasmic	143	183	0.89