YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	wht-8
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGASGAGKTT LLNTLLQRNL RGLQVEGEIL VNGQNIGKGV TSVSAYVQQE DLFMGTLTVK  60
   61 EHLDIQAKLR LPPGTSTTAR ATRVNEVMNE MLLEKPRDSR IGVPGIKKGI SGGEMKRLAF 120
  121 ATEMINNPPI IFCDEPTTGL DSHMSLQVVK TLEQMALEKG KTIICTIHQP SSEVVFLAQG 180
  181 RIAFHGAIDE AIHHFSSCGY QVPDHTNPAD YFIDTLAIKP SEAEACKSRC QELCDKFEKS 240
  241 FYNERLTKLM DQTKDVRAMT PHHSATYPVL LYALFYRYML DNIRNPAIMK AKLIQKLFMG 300
  301 LFIGTLFYGL ETDQDGLASY KGALFYYISE LTYSTIFGIQ AFMPADYPPL VREYDDRIYP 360
  361 ISAYYIAKIC SFLPIFTVDG IILVVSSYFL VGFPSDFGVF LRQIFTCMAI EWNVAALGIA 420
  421 VCATAPSYAI AVTVTGPLLT VFSLTGGLFT NIAEMPAWIN WVQYLSWFRY GYESLVVNQF 480
  481 QHDQFANITC NANMNEQLCE KSGPIAIKNF SFDTANLYTN WVAMIYLTII IYIVGYMGLV 540
  541 RRVIANR

Type	Start	End	Confidence
Cytoplasmic	1	292	0.68
Transmembrane Helix	293	310	0.87
Non-Cytoplasmic	311	322	0.80
Transmembrane Helix	323	343	0.78
Cytoplasmic	344	363	0.83
Transmembrane Helix	364	391	0.79
Non-Cytoplasmic	392	403	0.78
Transmembrane Helix	404	432	0.73
Cytoplasmic	433	437	0.48
Transmembrane Helix	438	458	0.82
Non-Cytoplasmic	459	520	0.94
Transmembrane Helix	521	540	0.94
Cytoplasmic	541	547	0.82