YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mig-1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	217	0.99
Transmembrane Helix	218	242	0.89
Cytoplasmic	243	253	0.85
Transmembrane Helix	254	274	0.93
Non-Cytoplasmic	275	291	0.90
Transmembrane Helix	292	322	0.68
Cytoplasmic	323	344	0.89
Transmembrane Helix	345	367	0.88
Non-Cytoplasmic	368	393	0.78
Transmembrane Helix	394	413	0.90
Cytoplasmic	414	420	0.79
Transmembrane Helix	421	441	0.94
Non-Cytoplasmic	442	463	0.88
Transmembrane Helix	464	484	0.93
Cytoplasmic	485	529	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPFRGYLGV TWLLLLFVIG VDGQRCQKVD HEMCNDLPYN LTSFPNLVDE ESWKDASESI  60
   61 LTYKPLLSVV CSEQLKFFLC SVYFPMCNEK LANPIGPCRP LCLSVQEKCL PVLESFGFKW 120
  121 PDVIRCDKFP LENNREKMCM KGPNEQGAIQ DERAKFAAKE SEDDGNDRVE DIQREVDRLN 180
  181 GKCPQDEVFL NRSSKCVPLC SNPQKVGQTD RESATRLLLF LSLSSVILTI LSVFIVGLSI 240
  241 YFRRLEMLHS LTETAMFFSC ISFCATSVIY IVSISFKDQF QISCTDYTHH LLFVVGGLSH 300
  301 VPCSSVASLI YYTATCSRLW WLLICVSWNK ATRTSHILDD SRTRVIMLIL GIPLAPLMLA 360
  361 LLAKAVAANP LTGLCFIGAA SPGTDWIFNF CRELILFLIS SIALSSACCR LLGSDEQDVN 420
  421 GFAGVIAAVY PIAGLFYMLS FVNDATQPFL SLDRSFNAVS ATKFSFDLLL SFIMCAFCLI 480
  481 YLLFKLTRSS SKVSKEGYQP AVPKLPQPAI PGSVRSNTYA STFRTNNMI