YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	hut-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.88
Transmembrane Helix	21	40	0.96
Non-Cytoplasmic	41	59	0.90
Transmembrane Helix	60	81	0.92
Cytoplasmic	82	93	0.83
Transmembrane Helix	94	113	0.76
Non-Cytoplasmic	114	121	0.69
Transmembrane Helix	122	140	0.43
Cytoplasmic	141	144	0.50
Transmembrane Helix	145	165	0.82
Non-Cytoplasmic	166	175	0.53
Transmembrane Helix	176	196	0.57
Cytoplasmic	197	213	0.81
Transmembrane Helix	214	237	0.83
Non-Cytoplasmic	238	244	0.79
Transmembrane Helix	245	265	0.92
Cytoplasmic	266	284	0.67
Transmembrane Helix	285	299	0.60
Non-Cytoplasmic	300	340	0.48

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKNHETPHH HGEVRSWLAE SGHFLICAGG ILICYFVFGI QQERIVQGKY ELPDESIEKF  60
   61 TFTQALVFFL CTANTIYAFL IRKKTEIDNV PTKMYAASAA SYLLAMVASN QALQYLPYPT 120
  121 QVLAKSCKPI PVMIFGVLFA HKSYHWRKYC YVLMIVVGVA MFLYKNKKGG AEDKDFGFGE 180
  181 LLLIFSLAMD GTTTSIQDRI KKSYQRTGTS MMFYTNLYSS LYLSAGLLVT GELWSFFYFV 240
  241 QRHPYVFWDL TGLAIASCLG QWCIFKTIEE FSPLTCSIVT TTRKLFTIII SVLFMNHPLS 300
  301 GRQILATTVV FSALTADVVD GKMTAAKKPL AATEPKVHNK