YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE23990
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPTGWQKI LYRKQPFPDN YSGGDAQFLK ELRKNVSVVH YDYKSAVFGC MNFLTHLDMI  60
   61 TMYFVLFLNI LHSNWSINIL YSVFSLTIVL YLFFCKFLIP NPANAKEHAR TIFTLFIFAY 120
  121 AFTPVIRTLT TSISTDTIYS TSIITAIFSC FFHDYGVKAP VVSYPTSVST GLSSAIFLLS 180
  181 RLEGDTPTLL LLVVAFTLHA YGAEFRNRIF HVYPCLSSTI FCFLSLFSIY CISDFSLELS 240
  241 ICFALLHIFI LFICPLILIL KQTGKCTIHG PWDEAVPLKS NT

Type	Start	End	Confidence
Cytoplasmic	1	47	0.90
Transmembrane Helix	48	71	0.75
Non-Cytoplasmic	72	76	0.76
Transmembrane Helix	77	99	0.89
Cytoplasmic	100	110	0.79
Transmembrane Helix	111	130	0.90
Non-Cytoplasmic	131	136	0.70
Transmembrane Helix	137	155	0.69
Cytoplasmic	156	160	0.54
Transmembrane Helix	161	179	0.62
Non-Cytoplasmic	180	185	0.56
Transmembrane Helix	186	203	0.83
Cytoplasmic	204	209	0.76
Transmembrane Helix	210	232	0.91
Non-Cytoplasmic	233	238	0.71
Transmembrane Helix	239	260	0.92
Cytoplasmic	261	282	0.84