YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE23957
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.79
Transmembrane Helix	42	62	0.70
Non-Cytoplasmic	63	135	0.63
Transmembrane Helix	136	156	0.61
Cytoplasmic	157	163	0.64
Transmembrane Helix	164	187	0.79
Non-Cytoplasmic	188	190	0.50
Transmembrane Helix	191	211	0.73
Cytoplasmic	212	219	0.80
Transmembrane Helix	220	241	0.88
Non-Cytoplasmic	242	246	0.81
Transmembrane Helix	247	267	0.94
Cytoplasmic	268	333	0.98
Transmembrane Helix	334	354	0.92
Non-Cytoplasmic	355	364	0.73
Transmembrane Helix	365	386	0.87
Cytoplasmic	387	394	0.82
Transmembrane Helix	395	416	0.93
Non-Cytoplasmic	417	423	0.80
Transmembrane Helix	424	445	0.92
Cytoplasmic	446	457	0.81
Transmembrane Helix	458	479	0.86
Non-Cytoplasmic	480	488	0.72
Transmembrane Helix	489	509	0.94
Cytoplasmic	510	591	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEFEEVELK QIRPTYAKKR KEKKDVVFYT NFEEVLQKIG AFGPYQIFCF IVILYASIEW  60
   61 AGNSTFMHLL GSFEPDWNCT LANNQTVIIT APTHDDTCNF IKQNCTNLAP VKQNLEFFSI 120
  121 VGQFQLICDD SDKVEYIEVI MAGSSLIGSI IGGHMGDHFG RQTIFFTGEL LIIITSMMCT 180
  181 AAQSWIAFSV IQGVNCFLYG VIETTSLTMM VEFTSNKFRV IMVNAFQWPI AYMTIALIAW 240
  241 LTQGWQVYFV FLNLVSSPLA IGFMLFLESP RWLIARNDLS EACEVLNDIA HQRWNNTKAR 300
  301 FTTKDISAIH KQEKQGFYWF YHLFSTKRLA KQSCLQIISV LTYAMVSNTY LFTVAGLHDS 360
  361 PIISTLIDGV LRLFIPIIIV IFDLMVPSFG RKIQFLGSLV IEGILFGVVI ALVATGTCTY 420
  421 DSKAVNILVI VTTMINDCIF WINIVQITTQ RYPTVIRCVA FGFLHSFRHI GAIIGFLILK 480
  481 PLLTSTWPVG AFVIPEAMIV LTILVGFFFQ PETKGKALMD QMVEANYGRL ENELPRALMR 540
  541 LAAGHRVDQS ETRQQHRKDM ESAKAAELMG KKVSSPWVFK EKDSGPNVKE D