YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE23950
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLDWFFPIE MLVVGLSGGV ATGKSTVSSV FRAHGVPIID ADQVARQVVV PGTSTYNRLR  60
   61 KEFGDEYFDD EHGGVLRRDK LGKLIFSNPE KRKALNGITH PAIRWEMFKQ FLTLLITGTK 120
  121 YIVFDTPLLF ESGYDKWIGT TIVVWCDFEQ EVERMVTRDN ISRADAESRI HAQMDIEEKK 180
  181 KRAKIVIDNN GNIDELREKV KHVIAQLDKS WKPYIFRVAF GIILGVVPYY FFKYIRS

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.56
Transmembrane Helix	7	27	0.49
Cytoplasmic	28	213	0.74
Transmembrane Helix	214	232	0.92
Non-Cytoplasmic	233	237	0.64